Update sequence files for existing project

Update the sequence data files for samples in an existing project database. After updating, user should rerun these samples, starting with the ASSEMBLE module. Creates a backup of the existing database prior to updating.

Usage

update_sample_seqdata(path = ".", update_mapping_fn = NULL, mapping_id = "ID")

Arguments

path

Path to the project directory (default = current working directory)

update_mapping_fn

Path to the update mapping CSV file. Must contain columns "ID", "R1", and "R2"

mapping_id

Column name of the update mapping file to use as the primary key