Function to take a GenBank feature table generated by MitoPilot and
convert it to GFF3 format, one GFF file per sample.
Could be useful for generating GFF files to review in Geneious
after manually editing the feature table in a text editor.
Usage
tbl_to_gff3(tbl = NULL, assembly_lengths = NULL, out = NULL)
Arguments
- tbl
Full path to GenBank feature table
- assembly_lengths
Two column tab-delimited file with no headers, first column sample ID (must match IDs in feature table), second column mitogenome length (in bp)
- out
Output directory for GFF files, will be created if it does not exist
Details
NOTE: this function has only been tested with GenBank feature tables produced by MitoPilot.
It likely will not work for a feature table downloaded directly from GenBank.
