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Re-stamp per-sample BLAST hit metadata onto a cached reference JSON

Source: R/blast_ref_utils.R
patch_blast_ref_meta.Rd

The BLAST reference JSON produced by [fetch_blast_ref()] is cached and shared across all samples whose top hit is the same accession (see the blast_ref_fetch Nextflow process). Every field is accession-derived except the per-sample BLAST hit metadata, so after a sample copies the cached JSON this rewrites blast_species and blast_evalue for that sample. No-op if the file is missing or unreadable.

Usage

patch_blast_ref_meta(json_file, blast_species = NULL, blast_evalue = NULL)

Arguments

json_file

path to the JSON file to patch in place

blast_species

BLAST hit species/title for this sample

blast_evalue

BLAST hit e-value for this sample