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Generate HTML report woth PCG alignments

Source: R/export.R
make_PCG_alignments.Rd

Generate HTML report woth PCG alignments

Usage

make_PCG_alignments(
  export_group = NULL,
  db = NULL,
  out_path = NULL,
  start_aa = 10,
  stop_aa = 10,
  ident_pct = 60
)

Arguments

export_group

Name of the submission group

db

path for sqlite database

out_path

path for output files

start_aa

Start-offset threshold (amino acids) for the flagged-outlier section of the report. Default 10.

stop_aa

Stop-offset threshold (amino acids) for the flagged-outlier section of the report. Default 10.

ident_pct

Identity threshold (percent) for the flagged-outlier section of the report. Default 60.