Skip to contents

Get top BLASTP hits

Source: R/app_annotate_utils.R
get_top_hits_local.Rd

If blastp is not available on the path loaded in system(), set options("MitoPilot.blastp" = "/path/to/blastp/executable")

Usage

get_top_hits_local(ref_db = NULL, query = NULL, max_blast_hits = 100)

Arguments

ref_db

reference database

query

query sequences

max_blast_hits

Maximum number of top BLAST hits to retain (default = 100)