Annotation curation for starfish mitogenomes

Usage

curate_starfish_mito(
  annotations_fn = NULL,
  assembly_fn = NULL,
  coverage_fn = NULL,
  genetic_code = 9,
  out_dir = NULL,
  max_blast_hits = 100,
  params = NULL
)

Arguments

annotations_fn: Path to the annotations file (csv)
assembly_fn: Path to the assembly file (fasta)
coverage_fn: Path to the coverage file (csv)
genetic_code: Genetic code to use (default = 2)
out_dir: Path to the output directory
max_blast_hits: Maximum number of top BLAST hits to retain (default = 100)
params: Nested list of curation parameters. Can also provided as a base64 encoded json string.