Update old project database for backwards compatibility — backwards

Update old project database for backwards compatibility. Adds "reviewed", "ID_verified", "genetic_code", and "problematic" columns to the annotate table, "start_gene" column to the annotate_opts table. Adds "assembler", "mitofinder_db", and "mitofinder" columns to the assemble_opts table. Adds "max_blast_hits" to the curate_opts table. Adds "asmbDir = 'NA'" to the .config params block and updates the container to the current MitoPilot version in the .config file. Updates the "ref_dir" and "ref_db" fields in the annotate_opts table adds these fields to the curate_opts table, and updates the curation rules in the curate_opts table.

Usage

backwards_compatibility(path = ".")

Arguments

path: Path to the project directory (default = current working directory)