Add new samples to an existing project database. All samples will inherit the default processing options. Creates a backup of the existing database prior to updating.
Usage
add_samples(
path = ".",
update_mapping_fn = NULL,
mapping_id = "ID",
mapping_taxon = "Taxon"
)Arguments
- path
Path to the project directory (default = current working directory)
- update_mapping_fn
Path to the update mapping CSV file. Must contain columns "ID", "Taxon, "R1", and "R2"
- mapping_id
Column name of the update mapping file to use as the primary key
- mapping_taxon
Column name of the update mapping file containing a Taxonomic identifier (eg, species name)